Theories behind raising the Cylinders would take a long time to completely analize.
Here's some points:
-raising the cylinders raises the exhaust ports which extends the exhaust port duration[measured in degrees of crankshaft revolution] Its like putting a high lift, long duration camshaft in a car or an Apex. Porting a cylinder can also do this, but sometimes the port is just widened, depending on the engine.
-more exhaust port duration potentially increases the pumping capability of the cylinder as well as raising the RPM capability of the cylinder to operate effectively...this all can enable the cylinder to pump more air...
more air = more horsepower
-raising the cylinder also raises the transfer ports of an engine...OK if they were conservatively low to begin with...but potentially power + torque robbing if the transfer ports were already near the highest power making + efficient height[like the Vipers transfers, + to some extent the 2000-2002 SRXs, already are]
The potential problems with just raising the cylinders:
- you also raise the ports floors... again not the optimum solution as this as well can cause power robbing + efficiency problems.
-cylinder heads will still have to be machined + sometimes cylinders will have to be cut to get the proper deck height, squish, + compression ratio
-raising the optimum power making RPM of an engine is futile if the exhaust and ignition system is not tuned to match the new RPM[I beleive this is the source of a lot of the issues with poor performing "ported SRXs"] as we all know our SRX exhausts and CDIs are designed to run at a max of approx 8500RPM... so why have an engine with porting designed for 9000RPM!?]
-just raising the cylinders also sets the piston down in the cylinder[deck height] when it reaches its highest upwards travel[TDC]...again not desireable
To make a long story short:
-everything in the engine must be matched to the common goal, RPM + horsepower, riding use,+ fuel...ect. A proper engine builder matches the porting to all these things and you get a very powerful, useable rocket... or if done incorrectly you get an unrideable, unreliable SLUG!
Its as I have always said...
"SPEED IS MATH....THE BEST MATHEMATICIAN WINS!!!"
JM.02c