I would put the back end up in the air, keep slowly filing it until full while running it. Once full, put cap on, and loosen rear bleeder till coolant comes out and repeat.
My buddy had a 2001 SXR 500, we did a thin head gasket mod to it last year, started blowing coolant out every 1/2 mile or so.
We would stop, let it cool, bleed it, go again. Would still keep blowing coolant out the overflow.
Went back to a regular thickness gasket, still happened.
There were several different heads used for the 500, and 2 to 3 different gaskets.
Eventually he fixed it, but I believe he had the wrong head gasket or had it installed wrong.