A small item that can be forgotten:
All the Yamaha TM33s I have on my sleds[ Vmax4,SX600 +700,SRXs] have a small wire mesh "cap" shaped fuel filter under each of the carbs float bowl needle-seat [fuel inlet]. These filters are a little harder to get at as the float has to be removed and the small screw, that holds the brass seat in place, has to be removed. Once the screw is out you gently remove the brass fuel inlet[or seat] from the carb body + on the backside is the filter held on by a plastic retaining ring. All the fuel that enters the individual carb has to go thru this filter! I have found some contaminated at times and they can definately be the cause of an illusive fuel starvation/lean condition. I have always removed them from the carbs on my first cleaning and not replaced them.
CAUTION:
The pins that hold the float pivot arm to the carb bodies can be difficult to tap out the first time! You need the proper size punch, support the carb body and light tapping. It is very easy to break the carb body float arm pivot mounts if EXTREME CARE is not exercised! So if unsure don't try to force the pin out and maybe just try to back flush the float bowl with carb cleaner.
JM.02c