Do not run a boost bottle. You will lose alot of hp. I was still on the lean side when I had the boost bottle installed, and was down alot.
Don't mess around, and start with 400 mains and bring it down from there. Run the stock intake boots. I didn't like the angle of the carbs with the phazer boots. Remove the top shelf in the airbox, and ensure there are no lower dividers (if you have them). As for airbox boots, you can just modify the stock SRX boots to work. Pull the boot out of the airbox. You will see that the inside of the boot is rounded. Turn the boots around and face the rounded portion toward the carbs so they will slide over the bell of the carb. The amount of potion that now sticks out of the airbox is very thin. Don't worry about this because the carbs are much longer, and will fit in there nicely. Cut the remaining part off the carb boot, so that both sides of the boot have the same depth. Therefore, when you are done, the boot is only about 1/2" wide.......with just the portions remaining that allow it to stay into the airbox. When you install the airbox, pull the airbox apart completely and install the bottom onto the carbs, then bolt the top shelf on.