I'd also add that if you plan to overhaul the shocks now is the time rather then allowing any moisture that's accumulated to sit inside over the summer.
I prefer spray silicone and use it on every thing that isn't painted (i.e. everything underhood, tunnel, track, bearings, clutch faces, wiring etc...) it'll help draw out any moisture and protect rubber.
Nothing wrong with storing with fuel but I would highly recommend draining it next season and use fresh, in season fuel before heading out for the first ride... after pulling and cleaning the carbs.
I personally drain, run dry then run the engine on at least a half can of fogging oil... gumming up the PVs real good in the process ;>)
JMO.