Remove the airbox and check every inch of every single line: fuel lines, oil line, pulse line. Make sure they are all hooked up on both ends. Make sure the fuel line is hooked up from the pump to the tank, and also still hooked up inside the tank with the filter resting on the bottom.
Double check all lines where they run under or near the jackshaft, I had an oil line rub through to where it was barely starting to leak, thankfully I caught it in time and fixed/rerouted. If your pulse line rubs through, the fuel pump won't be able to pump.
Any chance you have a fuel line on/off valve that got bumped to off while cleaning?